PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp1g25520
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 403aa    MW: 49057.7 Da    PI: 8.2982
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp1g25520genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.3e-07223243424
                ---SGGGGTS--TTTTT-SS- CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFa 24 
                + C+++++ G+C+yG rC+++
  Tp1g25520 223 KDCPHYLKKGWCSYGRRCHYN 243
                68*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.69219250IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4223243IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MADARENLQE AQRRRRRRRR SDETESRFIE EIRGRVPDMR PIGLRWRSDE RTDWGYETDS  60
RSWAENREYE YSDPRVNEAG QIRYRKESYA DRREKLQQGR LRDFEMQQWR SHEEESRFLQ  120
QEKREYGYSG SRLNEAVHIR DHNDSYADIR ENLQKHRQRD SEMERISHEK ESRFQQQKRA  180
RTPDWRGSPD WGWSESSRRF DERTQMRHEP AQTSVYPYRP GLKDCPHYLK KGWCSYGRRC  240
HYNYPTHSPP DSKARTPDWR ASESAWRFDE KTQRRQETES IHMPEKMART LPDSQEHASR  300
ERYADTCQSR DGIVAGYKRA QMNLQEEEDA AIERPMRQSQ EDLEIQRWED AENREIRLRL  360
MRRFDQEQED MERQAREAQG NAQEQIRKSL PGRGIERKEG DGF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11117QRRRRRR
21219RRRRRRRR
31319RRRRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415561.16e-64hypothetical protein EUTSA_v10009455mg, partial
TrEMBLV4KRH67e-64V4KRH6_EUTSA; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2341133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29570.13e-19C3H family protein